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Documentation revamp is in progress.
These docs are currently being refactored as we consolidate 5D Parallelism Training code with bionemo-recipes. The best source of documentation today is the module READMEs + your favorite genai assistant.
5D Parallel Models Moved to bionemo-recipes
The 5D parallel training implementations for ESM-2, Amplify, and Geneformer have been migrated to simplified TransformerEngine + FSDP implementations in bionemo-recipes. For training these models, please refer to the recipes in bionemo-recipes/recipes/ (e.g., esm2_native_te, geneformer_native_te_mfsdp_fp8). Model cards and checkpoint information remain available in these docs.
NVIDIA BioNeMo Framework is a collection of programming tools, libraries, and models for computational drug discovery. It accelerates the most time-consuming and costly stages of building and adapting biomolecular AI models by providing domain-specific, optimized models and tooling that are easily integrated into GPU-based computational resources for the fastest performance on the market. You can access BioNeMo Framework as a free community resource or learn more about getting an enterprise license for improved expert-level support at the BioNeMo homepage.
Install BioNeMo and set up your environment to start accelerating your bioinformatics workflows.
Access comprehensive documentation on BioNeMo's sub-packages, functions, and classes.
Explore detailed instructions and best practices for using BioNeMo models in your research.
Explore biomolecular datasets that come pre-packaged with the BioNeMo Framework.