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Index

Example configs

These configs are provided as examples to the user. Note that the files referenced in these configs can be downloaded from OpenGenome2 dataset on Hugging Face.

  • full_pretrain_shortphase_config.yaml was used to test full scale pre-training runs of evo2 at the 8k context length.
  • full_pretrain_longphase_config.yaml was used to test full scale context extension phase pre-training (starting from an 8k checkpoint and continuing to train at longer context lengths).
  • test_preproc_config.yaml was used to test our preprocessing scripts to generate .bin/.idx files that are used for pre-training from fasta file inputs.
  • test_promotors_dataset_config.yaml is a smaller test file that can be used for pre-training but is one of the smaller tests.