Source code for multistorageclient.contrib.zarr

  1# SPDX-FileCopyrightText: Copyright (c) 2024 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
  2# SPDX-License-Identifier: Apache-2.0
  3#
  4# Licensed under the Apache License, Version 2.0 (the "License");
  5# you may not use this file except in compliance with the License.
  6# You may obtain a copy of the License at
  7#
  8# http://www.apache.org/licenses/LICENSE-2.0
  9#
 10# Unless required by applicable law or agreed to in writing, software
 11# distributed under the License is distributed on an "AS IS" BASIS,
 12# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 13# See the License for the specific language governing permissions and
 14# limitations under the License.
 15
 16import os
 17from concurrent.futures import ThreadPoolExecutor, as_completed
 18from typing import TYPE_CHECKING, Any, Iterator, Mapping, Optional, Sequence, Tuple
 19
 20import zarr as _zarr
 21from zarr.storage import BaseStore
 22
 23from ..shortcuts import resolve_storage_client
 24from ..types import MSC_PROTOCOL
 25import numpy as np
 26
 27if TYPE_CHECKING:
 28    from ..client import StorageClient
 29
 30

[docs]
 31def open_consolidated(*args: Any, **kwargs: Any) -> _zarr.Group:
 32    """
 33    Adapt ``zarr.open_consolidated`` to use :py:class:`LazyZarrStore` when path matches the ``msc`` protocol.
 34
 35    If the path starts with the MSC protocol, it uses :py:class:`LazyZarrStore` with a resolved
 36    storage client and prefix, passing ``msc_max_workers`` if provided. Otherwise, it
 37    directly calls ``zarr.open_consolidated``.
 38    """
 39    args_list = list(args)
 40    path = args_list[0] if args_list else kwargs.get("store")
 41    msc_max_workers = kwargs.pop("msc_max_workers", None)
 42    if isinstance(path, str) and path.startswith(MSC_PROTOCOL):
 43        storage_client, prefix = resolve_storage_client(path)
 44        zarr_store = LazyZarrStore(storage_client, prefix=prefix, msc_max_workers=msc_max_workers)
 45        if path == args_list[0]:
 46            args_list[0] = zarr_store
 47        else:
 48            kwargs["store"] = zarr_store
 49        return _zarr.open_consolidated(*args_list, **kwargs)  # pyright: ignore [reportReturnType]
 50    return _zarr.open_consolidated(*args, **kwargs)  # pyright: ignore [reportReturnType]

 51
 52
 53# pyright: reportIncompatibleMethodOverride=false

[docs]
 54class LazyZarrStore(BaseStore):
 55    def __init__(
 56        self, storage_client: "StorageClient", prefix: str = "", msc_max_workers: Optional[int] = None
 57    ) -> None:
 58        self.storage_client = storage_client
 59        self.prefix = prefix
 60        self.max_workers = msc_max_workers or int(os.getenv("MSC_MAX_WORKERS", "8"))
 61
 62    def __getitem__(self, key: str) -> Any:
 63        full_key = self.prefix + key
 64        return self.storage_client.read(full_key)
 65

[docs]
 66    def getitems(self, keys: Sequence[str], *, contexts: Any) -> Mapping[str, Any]:
 67        def get_item(key: str) -> Tuple[str, Any]:
 68            return key, self.__getitem__(key)
 69
 70        with ThreadPoolExecutor(max_workers=self.max_workers) as executor:
 71            futures = {executor.submit(get_item, key): key for key in keys}
 72            results = {}
 73            for future in as_completed(futures):
 74                key, value = future.result()
 75                results[key] = value
 76        return results

 77
 78    def __setitem__(self, key: str, value: Any) -> None:
 79        full_key = self.prefix + key
 80        if isinstance(value, np.ndarray):
 81            value = value.tobytes()
 82        self.storage_client.write(full_key, value)
 83
 84    def __delitem__(self, key: str) -> None:
 85        full_key = self.prefix + key
 86        self.storage_client.delete(full_key)
 87
 88    def __contains__(self, key: str) -> bool:
 89        full_key = self.prefix + key
 90        try:
 91            self.storage_client.info(full_key)
 92            return True
 93        except Exception:
 94            return False
 95

[docs]
 96    def keys(self) -> Iterator[str]:
 97        for object in self.storage_client.list(self.prefix):
 98            yield object.key.removeprefix(self.prefix)

 99
100    def __iter__(self) -> Iterator[str]:
101        return iter(self.keys())
102
103    def __len__(self) -> int:
104        return sum(1 for _ in self.keys())