Source code for multistorageclient.providers.manifest_metadata

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 15
 16from __future__ import annotations  # Enables forward references in type hints
 17
 18import json
 19import logging
 20import os
 21from collections.abc import Iterator
 22from dataclasses import asdict, dataclass
 23from datetime import datetime, timezone
 24from typing import Any, Optional, Union
 25
 26from ..types import (
 27    AWARE_DATETIME_MIN,
 28    MAX_SYMLINK_DEPTH,
 29    MetadataProvider,
 30    ObjectMetadata,
 31    ResolvedPath,
 32    ResolvedPathState,
 33    StorageProvider,
 34)
 35from ..utils import create_attribute_filter_evaluator, glob, matches_attribute_filter_expression
 36from .manifest_formats import ManifestFormat, get_format_handler
 37from .manifest_object_metadata import ManifestObjectMetadata
 38
 39logger = logging.getLogger(__name__)
 40
 41
 42DEFAULT_MANIFEST_BASE_DIR = ".msc_manifests"
 43MANIFEST_INDEX_FILENAME = "msc_manifest_index.json"
 44MANIFEST_PARTS_CHILD_DIR = "parts"
 45MANIFEST_PART_PREFIX = "msc_manifest_part"
 46SEQUENCE_PADDING = 6  # Define padding for the sequence number (e.g., 6 for "000001")
 47
 48
[docs] 49@dataclass 50class ManifestPartReference: 51 """ 52 A data class representing a reference to dataset manifest part. 53 """ 54 55 #: The path of the manifest part relative to the main manifest. 56 path: str 57
[docs] 58 @staticmethod 59 def from_dict(data: dict[str, Any]) -> ManifestPartReference: 60 """ 61 Creates a ManifestPartReference instance from a dictionary. 62 """ 63 # Validate that the required 'path' field is present 64 if "path" not in data: 65 raise ValueError("Missing required field: 'path'") 66 67 return ManifestPartReference(path=data["path"])
68
[docs] 69 def to_dict(self) -> dict: 70 """ 71 Converts ManifestPartReference instance to a dictionary. 72 """ 73 return { 74 "path": self.path, 75 }
76 77
[docs] 78@dataclass 79class Manifest: 80 """ 81 A data class representing a dataset manifest. 82 """ 83 84 #: Defines the version of the manifest schema. 85 version: str 86 #: References to manifest parts. 87 parts: list[ManifestPartReference] 88 #: Format of manifest parts (jsonl or parquet). 89 format: str = "jsonl" 90
[docs] 91 @staticmethod 92 def from_dict(data: dict) -> "Manifest": 93 """ 94 Creates a Manifest instance from a dictionary (parsed from JSON). 95 """ 96 try: 97 version = data["version"] 98 parts = [ManifestPartReference.from_dict(part) for part in data["parts"]] 99 format = data.get("format", "jsonl") 100 except KeyError as e: 101 raise ValueError("Invalid manifest data: Missing required field") from e 102 103 return Manifest(version=version, parts=parts, format=format)
104
[docs] 105 def to_json(self) -> str: 106 data = asdict(self) 107 data["parts"] = [part.to_dict() for part in self.parts] 108 return json.dumps(data)
109 110
[docs] 111class ManifestMetadataProvider(MetadataProvider): 112 _storage_provider: StorageProvider 113 _files: dict[str, ManifestObjectMetadata] 114 _pending_adds: dict[str, ManifestObjectMetadata] 115 _pending_removes: set[str] 116 _manifest_path: str 117 _writable: bool 118 _allow_overwrites: bool 119 _format: Union[ManifestFormat, str] 120 121 def __init__( 122 self, 123 storage_provider: StorageProvider, 124 manifest_path: str, 125 writable: bool = False, 126 allow_overwrites: bool = False, 127 manifest_format: Union[ManifestFormat, str] = ManifestFormat.JSONL, 128 ) -> None: 129 """ 130 Creates a :py:class:`ManifestMetadataProvider`. 131 132 :param storage_provider: Storage provider. 133 :param manifest_path: Main manifest file path. 134 :param writable: If true, allows modifications and new manifests to be written. 135 :param allow_overwrites: If true, allows overwriting existing files without error. 136 :param manifest_format: Format for manifest parts. Defaults to ManifestFormat.JSONL. 137 """ 138 self._storage_provider = storage_provider 139 self._files = {} 140 self._pending_adds = {} 141 self._pending_removes = set() 142 self._manifest_path = manifest_path 143 self._writable = writable 144 self._allow_overwrites = allow_overwrites 145 self._format = ( 146 manifest_format if isinstance(manifest_format, ManifestFormat) else ManifestFormat(manifest_format) 147 ) 148 149 self._load_manifest(storage_provider, self._manifest_path) 150 151 def _load_manifest(self, storage_provider: StorageProvider, manifest_path: str) -> None: 152 """ 153 Loads manifest. 154 155 :param storage_provider: Storage provider. 156 :param manifest_path: Main manifest file path 157 """ 158 159 def helper_find_manifest_file(manifest_path: str) -> str: 160 if storage_provider.is_file(manifest_path): 161 return manifest_path 162 163 if storage_provider.is_file(os.path.join(manifest_path, MANIFEST_INDEX_FILENAME)): 164 return os.path.join(manifest_path, MANIFEST_INDEX_FILENAME) 165 166 # Now go looking and select newest manifest. 167 if DEFAULT_MANIFEST_BASE_DIR not in manifest_path.split("/"): 168 manifest_path = os.path.join(manifest_path, DEFAULT_MANIFEST_BASE_DIR) 169 170 candidates = storage_provider.glob(os.path.join(manifest_path, "*", MANIFEST_INDEX_FILENAME)) 171 candidates = sorted(candidates) 172 return candidates[-1] if candidates else "" 173 174 resolved_manifest_path = helper_find_manifest_file(manifest_path) 175 if not resolved_manifest_path: 176 logger.warning(f"No manifest found at '{manifest_path}'.") 177 return 178 179 file_content = storage_provider.get_object(resolved_manifest_path) 180 181 prefix = os.path.dirname(resolved_manifest_path) 182 _, file_extension = os.path.splitext(resolved_manifest_path) 183 self._load_manifest_file(storage_provider, file_content, prefix, file_extension[1:]) 184 185 def _load_manifest_file( 186 self, storage_provider: StorageProvider, file_content: bytes, manifest_base: str, file_type: str 187 ) -> None: 188 """ 189 Loads a manifest. 190 191 :param storage_provider: Storage provider. 192 :param file_content: Manifest file content bytes. 193 :param manifest_base: Manifest file base path. 194 :param file_type: Manifest file type. 195 """ 196 if file_type == "json": 197 manifest_dict = json.loads(file_content.decode("utf-8")) 198 manifest = Manifest.from_dict(manifest_dict) 199 200 # Check manifest version. Not needed once we make the manifest model use sum types/discriminated unions. 201 if manifest.version != "1": 202 raise ValueError(f"Manifest version {manifest.version} is not supported.") 203 204 # Load manifest parts. 205 for manifest_part_reference in manifest.parts: 206 object_metadata_list: list[ManifestObjectMetadata] = self._load_manifest_part_file( 207 storage_provider=storage_provider, 208 manifest_base=manifest_base, 209 manifest_part_reference=manifest_part_reference, 210 manifest_format=manifest.format, 211 ) 212 213 for object_metadatum in object_metadata_list: 214 self._files[object_metadatum.key] = object_metadatum 215 else: 216 raise NotImplementedError(f"Manifest file type {file_type} is not supported.") 217 218 def _load_manifest_part_file( 219 self, 220 storage_provider: StorageProvider, 221 manifest_base: str, 222 manifest_part_reference: ManifestPartReference, 223 manifest_format: Union[ManifestFormat, str] = ManifestFormat.JSONL, 224 ) -> list[ManifestObjectMetadata]: 225 """ 226 Loads a manifest part and converts to ManifestObjectMetadata. 227 228 :param storage_provider: Storage provider. 229 :param manifest_base: Manifest file base path. Prepend to manifest part reference paths. 230 :param manifest_part_reference: Manifest part reference. 231 :param manifest_format: Format of the manifest part (jsonl or parquet). 232 """ 233 if not os.path.isabs(manifest_part_reference.path): 234 remote_path = os.path.join(manifest_base, manifest_part_reference.path) 235 else: 236 remote_path = manifest_part_reference.path 237 manifest_part_file_content = storage_provider.get_object(remote_path) 238 239 _, ext = os.path.splitext(remote_path) 240 detected_format = ext[1:] if ext else manifest_format 241 242 format_handler = get_format_handler(detected_format) 243 object_metadata_list = format_handler.read_part(manifest_part_file_content) 244 245 # Convert ObjectMetadata to ManifestObjectMetadata 246 # The format handler returns ObjectMetadata, but may have extra attributes set (like physical_path) 247 return [ManifestObjectMetadata.from_object_metadata(obj) for obj in object_metadata_list] 248 249 def _write_manifest_files( 250 self, 251 storage_provider: StorageProvider, 252 object_metadata: list[ManifestObjectMetadata], 253 manifest_format: Union[ManifestFormat, str] = ManifestFormat.JSONL, 254 ) -> None: 255 """ 256 Writes the main manifest and its part files. 257 258 Accepts ManifestObjectMetadata which extends ObjectMetadata, so format handlers 259 (which expect ObjectMetadata) can serialize it, preserving all fields including physical_path. 260 261 :param storage_provider: The storage provider to use for writing. 262 :param object_metadata: ManifestObjectMetadata objects to include in manifest. 263 :param manifest_format: Format for manifest parts. Defaults to ManifestFormat.JSONL. 264 """ 265 if not object_metadata: 266 return 267 268 base_path = self._manifest_path 269 manifest_base_path = base_path 270 271 base_path_parts = base_path.split(os.sep) 272 if DEFAULT_MANIFEST_BASE_DIR in base_path_parts: 273 manifests_index = base_path_parts.index(DEFAULT_MANIFEST_BASE_DIR) 274 if manifests_index > 0: 275 manifest_base_path = os.path.join(*base_path_parts[:manifests_index]) 276 else: 277 manifest_base_path = "" 278 if base_path.startswith(os.sep): 279 manifest_base_path = os.sep + manifest_base_path 280 281 current_time = datetime.now(timezone.utc) 282 current_time_str = current_time.isoformat(timespec="seconds") 283 manifest_folderpath = os.path.join(manifest_base_path, DEFAULT_MANIFEST_BASE_DIR, current_time_str) 284 285 format_handler = get_format_handler(manifest_format) 286 suffix = format_handler.get_file_suffix() 287 288 # We currently write only one part by default. 289 part_sequence_number = 1 290 manifest_part_file_path = os.path.join( 291 MANIFEST_PARTS_CHILD_DIR, 292 f"{MANIFEST_PART_PREFIX}{part_sequence_number:0{SEQUENCE_PADDING}}{suffix}", 293 ) 294 295 format_value = manifest_format.value if isinstance(manifest_format, ManifestFormat) else manifest_format 296 manifest = Manifest( 297 version="1", parts=[ManifestPartReference(path=manifest_part_file_path)], format=format_value 298 ) 299 300 manifest_part_content = format_handler.write_part(list(object_metadata)) 301 storage_provider.put_object(os.path.join(manifest_folderpath, manifest_part_file_path), manifest_part_content) 302 303 manifest_file_path = os.path.join(manifest_folderpath, MANIFEST_INDEX_FILENAME) 304 manifest_content = manifest.to_json() 305 storage_provider.put_object(manifest_file_path, manifest_content.encode("utf-8")) 306
[docs] 307 def list_objects( 308 self, 309 path: str, 310 start_after: Optional[str] = None, 311 end_at: Optional[str] = None, 312 include_directories: bool = False, 313 attribute_filter_expression: Optional[str] = None, 314 show_attributes: bool = False, 315 ) -> Iterator[ObjectMetadata]: 316 """ 317 List objects in the manifest. 318 319 :param path: The path to filter objects by. 320 :param start_after: The object to start after. 321 :param end_at: The object to end at. 322 :param include_directories: Whether to include directories. 323 :param attribute_filter_expression: The attribute filter expression to filter objects by. 324 :param show_attributes: This field is not used in this implementation - It will always return attributes. This is present merely to satisfy the interface. 325 """ 326 327 if (start_after is not None) and (end_at is not None) and not (start_after < end_at): 328 raise ValueError(f"start_after ({start_after}) must be before end_at ({end_at})!") 329 330 if path and not path.endswith("/"): 331 path = path + "/" 332 333 # create evaluator for attribute filter expression if present 334 evaluator = ( 335 create_attribute_filter_evaluator(attribute_filter_expression) if attribute_filter_expression else None 336 ) 337 338 if include_directories: 339 # Match delimiter-style providers such as S3: list the immediate child 340 # directories first, then the immediate files. The manifest only stores 341 # object keys, so this view is built on demand for the requested path. 342 directories: dict[str, ObjectMetadata] = {} 343 synthetic_directories: set[str] = set() 344 files: list[ObjectMetadata] = [] 345 346 for key, obj_metadata in sorted(self._files.items()): 347 if not key.startswith(path) or ( 348 evaluator is not None and not matches_attribute_filter_expression(obj_metadata, evaluator) 349 ): 350 continue 351 352 relative = key[len(path) :].lstrip("/") 353 354 if "/" not in relative: 355 if (start_after is not None and key <= start_after) or (end_at is not None and end_at < key): 356 continue 357 358 if obj_metadata.type == "directory": 359 # Prefer explicit directory entries from the manifest when present. 360 directory_key = obj_metadata.key.rstrip("/") 361 directories[directory_key] = ObjectMetadata( 362 key=directory_key, 363 type="directory", 364 last_modified=obj_metadata.last_modified, 365 content_length=0, 366 content_type=obj_metadata.content_type, 367 etag=obj_metadata.etag, 368 storage_class=obj_metadata.storage_class, 369 metadata=obj_metadata.metadata, 370 symlink_target=obj_metadata.symlink_target, 371 ) 372 synthetic_directories.discard(directory_key) 373 else: 374 files.append(obj_metadata) 375 continue 376 377 # Nested files imply an immediate child directory under the listed path. 378 directory_name = f"{path}{relative.split('/', 1)[0]}" 379 directory_key = directory_name.rstrip("/") 380 existing_directory = directories.get(directory_key) 381 if existing_directory is None: 382 directories[directory_key] = ObjectMetadata( 383 key=directory_key, 384 type="directory", 385 last_modified=obj_metadata.last_modified, 386 content_length=0, 387 ) 388 synthetic_directories.add(directory_key) 389 else: 390 if directory_key in synthetic_directories: 391 existing_directory.last_modified = max( 392 existing_directory.last_modified, obj_metadata.last_modified 393 ) 394 395 yield from ( 396 directories[key] 397 for key in sorted(directories) 398 if (start_after is None or start_after < key) and (end_at is None or key <= end_at) 399 ) 400 yield from sorted(files, key=lambda obj: obj.key) 401 return 402 403 # Note that this is a generator, not a tuple (there's no tuple comprehension). 404 keys = ( 405 key 406 for key, obj_metadata in self._files.items() 407 if key.startswith(path) 408 and obj_metadata.type != "directory" 409 and (start_after is None or start_after < key) 410 and (end_at is None or key <= end_at) 411 and ( 412 evaluator is None or matches_attribute_filter_expression(obj_metadata, evaluator) 413 ) # filter by evaluator if present 414 ) 415 416 for key in sorted(keys): 417 yield self._files[key]
418
[docs] 419 def get_object_metadata(self, path: str, include_pending: bool = False) -> ObjectMetadata: 420 if path in self._files: 421 if include_pending and path in self._pending_removes: 422 raise FileNotFoundError(f"Object {path} does not exist.") 423 else: 424 # Return ManifestObjectMetadata directly (it extends ObjectMetadata) 425 return self._files[path] 426 elif include_pending and path in self._pending_adds: 427 return self._pending_adds[path] 428 else: 429 return self._get_directory_metadata(path, include_pending)
430 431 def _get_directory_metadata(self, path: str, include_pending: bool) -> ObjectMetadata: 432 dir_prefix = path.rstrip("/") + "/" 433 434 has_committed = any( 435 k.startswith(dir_prefix) and (not include_pending or k not in self._pending_removes) for k in self._files 436 ) 437 has_pending = include_pending and any(k.startswith(dir_prefix) for k in self._pending_adds) 438 439 if not has_committed and not has_pending: 440 raise FileNotFoundError(f"Object {path} does not exist.") 441 442 return ObjectMetadata( 443 key=dir_prefix, 444 type="directory", 445 content_length=0, 446 last_modified=AWARE_DATETIME_MIN, 447 ) 448
[docs] 449 def glob(self, pattern: str, attribute_filter_expression: Optional[str] = None) -> list[str]: 450 """ 451 List objects in the manifest. 452 453 :param pattern: The pattern to filter objects by. 454 :param attribute_filter_expression: The attribute filter expression to filter objects by. 455 """ 456 457 all_objects = [ 458 object.key for object in self.list_objects("", attribute_filter_expression=attribute_filter_expression) 459 ] 460 return [key for key in glob(all_objects, pattern)]
461
[docs] 462 def realpath(self, logical_path: str) -> ResolvedPath: 463 """ 464 Resolves a logical path to its physical storage path if the object exists. 465 Only checks committed files, not pending changes. 466 Follows ``symlink_target`` chains in the manifest with depth limit and cycle detection. 467 468 :param logical_path: The user-facing logical path 469 470 :return: ResolvedPath with exists=True if found, exists=False otherwise 471 """ 472 visited: set[str] = set() 473 current = logical_path 474 for _ in range(MAX_SYMLINK_DEPTH): 475 manifest_obj = self._files.get(current) 476 if not manifest_obj: 477 return ResolvedPath(physical_path=current, state=ResolvedPathState.UNTRACKED, profile=None) 478 if not manifest_obj.symlink_target: 479 if manifest_obj.physical_path is None: 480 raise ValueError(f"Manifest entry for '{current}' has no physical path") 481 return ResolvedPath( 482 physical_path=manifest_obj.physical_path, state=ResolvedPathState.EXISTS, profile=None 483 ) 484 if current in visited: 485 raise ValueError(f"Symlink cycle detected at: {current}") 486 visited.add(current) 487 current = ObjectMetadata.resolve_symlink_target(current, manifest_obj.symlink_target) 488 raise ValueError(f"Too many levels of symlinks (>{MAX_SYMLINK_DEPTH}): {logical_path}")
489
[docs] 490 def generate_physical_path(self, logical_path: str, for_overwrite: bool = False) -> ResolvedPath: 491 """ 492 Generates a physical storage path for a new object or for overwriting an existing object. 493 494 For now, this simply returns the logical path (no path rewriting). 495 In the future, this could generate unique paths for overwrites. 496 497 :param logical_path: The user-facing logical path 498 :param for_overwrite: When ``True``, generate a path for overwriting an existing object. 499 500 :return: The physical storage path to use for writing 501 """ 502 # For now, physical path = logical path 503 # Future enhancement: generate unique paths for overwrites 504 # if for_overwrite and self._allow_overwrites: 505 # return f"{logical_path}-{uuid.uuid4().hex}" 506 return ResolvedPath(physical_path=logical_path, state=ResolvedPathState.UNTRACKED, profile=None)
507
[docs] 508 def add_file(self, path: str, metadata: ObjectMetadata) -> None: 509 if not self.is_writable(): 510 raise RuntimeError(f"Manifest update support not enabled in configuration. Attempted to add {path}.") 511 512 # Check if file already exists in committed state and overwrites are not allowed 513 # Pending files can always be overwritten 514 if not self._allow_overwrites and path in self._files: 515 raise FileExistsError(f"File {path} already exists and overwrites are not allowed.") 516 517 # Handle two cases: 518 # 1. If metadata is already a ManifestObjectMetadata, use it directly 519 # 2. Otherwise, create one assuming metadata.key contains the physical path 520 if isinstance(metadata, ManifestObjectMetadata): 521 # Already has proper logical/physical path separation 522 manifest_metadata = metadata 523 # Ensure the logical path matches what was requested 524 if manifest_metadata.key != path: 525 raise ValueError(f"Logical path mismatch: expected {path}, got {manifest_metadata.key}") 526 else: 527 # For backward compatibility, create a ManifestObjectMetadata from ObjectMetadata 528 manifest_metadata = ManifestObjectMetadata( 529 key=path, # Logical path (user-facing) 530 content_length=metadata.content_length, 531 last_modified=metadata.last_modified, 532 content_type=metadata.content_type, 533 etag=metadata.etag, 534 metadata=metadata.metadata, 535 type=metadata.type, 536 physical_path=metadata.key, # Physical path (from storage provider) 537 ) 538 539 # TODO: Time travel is not supported - we do not rename file paths when overwriting. 540 # When a file is overwritten, the manifest points to the new version of the file at the same location 541 # without maintaining history of previous versions. 542 self._pending_adds[path] = manifest_metadata
543
[docs] 544 def remove_file(self, path: str) -> None: 545 if not self.is_writable(): 546 raise RuntimeError(f"Manifest update support not enabled in configuration. Attempted to remove {path}.") 547 if path not in self._files: 548 raise FileNotFoundError(f"Object {path} does not exist.") 549 self._pending_removes.add(path)
550
[docs] 551 def is_writable(self) -> bool: 552 return self._writable
553
[docs] 554 def allow_overwrites(self) -> bool: 555 return self._allow_overwrites
556
[docs] 557 def should_use_soft_delete(self) -> bool: 558 return False
559
[docs] 560 def commit_updates(self) -> None: 561 if not self._pending_adds and not self._pending_removes: 562 return 563 564 if self._pending_adds: 565 self._files.update(self._pending_adds) 566 self._pending_adds = {} 567 568 for path in self._pending_removes: 569 self._files.pop(path) 570 self._pending_removes = set() 571 572 # Serialize ManifestObjectMetadata directly 573 # to_dict() will include all fields including physical_path 574 object_metadata = list(self._files.values()) 575 self._write_manifest_files(self._storage_provider, object_metadata, manifest_format=self._format)